Derived from 518 genomes. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | non-normal | 518 | 205,648 | 69,334 | 48,448 | 167,202 | 202,541 | 234,514 | 425,523 |
| no_of_contigs | non-normal | 518 | 119.02 | 40.65 | 55 | 92 | 109 | 132 | 319 |
| longest | non-normal | 518 | 481,346 | 113,252 | 154,186 | 406,311 | 528,652 | 534,098 | 667,438 |
| GC_Content | non-normal | 518 | 64.73 | 0.08 | 64.48 | 64.72 | 64.75 | 64.78 | 64.87 |
| Completeness_Specific | non-normal | 518 | 100 | 0 | 100 | 100 | 100 | 100 | 100 |
| Contamination | non-normal | 518 | 0.06 | 0.05 | 0 | 0.03 | 0.05 | 0.08 | 0.37 |
| Total_Coding_Sequences | non-normal | 518 | 4,494 | 88.51 | 4,228 | 4,439 | 4,470 | 4,513 | 4,825 |
| Genome_Size | non-normal | 518 | 5,228,038 | 79,512 | 4,988,835 | 5,187,895 | 5,219,365 | 5,234,060 | 5,504,372 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 518 genomes
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.