Pseudomonas glycinae is a Gram-negative, aerobic rod of the family Pseudomonadaceae, originally isolated from soybean (Glycine max) plants. It belongs to the Pseudomonas putida phylogenetic group and has been associated with plant rhizospheres, where it may play a role in nutrient cycling and plant-microbe interactions. P. glycinae is genomically differentiated from close relatives by whole-genome comparisons and possesses a moderately sized genome with diverse metabolic gene clusters.
Derived from 187 genomes: 1 from RefSeq and 186 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | normal | 186 | 290,544 | 69,598 | 118,458 | 243,768 | 306,806 | 327,633 | 543,970 |
| no_of_contigs | non-normal | 186 | 81.55 | 23.83 | 53 | 62.25 | 75.5 | 93 | 195 |
| longest | normal | 186 | 628,373 | 142,049 | 323,804 | 527,342 | 676,422 | 741,695 | 1,016,079 |
| GC_Content | non-normal | 186 | 60.56 | 0.01 | 60.54 | 60.55 | 60.55 | 60.56 | 60.58 |
| Completeness_Specific | non-normal | 186 | 100 | 0 | 99.99 | 100 | 100 | 100 | 100 |
| Contamination | non-normal | 186 | 2.01 | 0.04 | 1.91 | 2.01 | 2.01 | 2.01 | 2.33 |
| Total_Coding_Sequences | non-normal | 186 | 5,763 | 11.04 | 5,746 | 5,755 | 5,759 | 5,767 | 5,809 |
| Genome_Size | non-normal | 186 | 6,406,382 | 6,346 | 6,392,998 | 6,402,214 | 6,403,187 | 6,411,498 | 6,429,952 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 187 genomes including 1 RefSeq references
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.