Derived from 53,435 genomes: 272 from RefSeq and 53,163 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.1.
QualiBact qualibact-v1.1 thresholds for Neisseria gonorrhoeae, refined from v1.0 based on the expert-feedback survey (Nov 2025).
Two pins on the recommendation of the N. gonorrhoeae subgroup:
All other thresholds inherit unchanged from v1.0. WARN tier preserves the engine's tighter values. See the methods page for qualibact-v1.1 for the full pipeline.
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | non-normal | 53,163 | 56,312 | 12,012 | 22,038 | 47,078 | 55,929 | 64,571 | 148,242 |
| no_of_contigs | non-normal | 53,163 | 148.28 | 22.61 | 81 | 133 | 146 | 161 | 343 |
| longest | non-normal | 53,163 | 185,830 | 37,023 | 67,464 | 153,169 | 207,465 | 207,911 | 449,678 |
| GC_Content | non-normal | 53,163 | 52.49 | 0.1 | 52.13 | 52.41 | 52.46 | 52.58 | 52.82 |
| Completeness_Specific | non-normal | 53,163 | 99.99 | 0 | 99.95 | 99.99 | 99.99 | 99.99 | 100 |
| Contamination | non-normal | 53,163 | 0.12 | 0.04 | 0.01 | 0.1 | 0.12 | 0.14 | 0.64 |
| Total_Coding_Sequences | non-normal | 53,163 | 2,190 | 43.2 | 2,025 | 2,159 | 2,193 | 2,219 | 2,377 |
| Genome_Size | non-normal | 53,163 | 2,149,588 | 31,468 | 2,029,591 | 2,129,157 | 2,153,974 | 2,168,237 | 2,241,215 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 53,435 genomes including 272 RefSeq references
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.