Neisseria flavescens is a Gram-negative, oxidase-positive diplococcus in the family Neisseriaceae, typically found as a commensal of the human oropharynx and nasopharynx. It is generally non-pathogenic but has rarely been reported in cases of meningitis, septicaemia, and endocarditis, primarily in immunocompromised hosts. N. flavescens participates actively in horizontal gene transfer within the genus, and its genome can serve as a reservoir of antimicrobial resistance determinants, including penA alleles, that may transfer to pathogenic Neisseria species.
Derived from 114 genomes: 3 from RefSeq and 111 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.1.
QualiBact qualibact-v1.1 thresholds for Neisseria flavescens, refined from v1.0 based on the expert-feedback survey (Nov 2025).
Two pins on the recommendation of the N. gonorrhoeae subgroup, applied as general commensal-Neisseria thresholds:
All other thresholds inherit unchanged from v1.0. WARN tier preserves the engine's tighter values. See the methods page for qualibact-v1.1 for the full pipeline.
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | non-normal | 111 | 136,967 | 61,696 | 33,378 | 84,972 | 121,024 | 173,463 | 346,305 |
| no_of_contigs | non-normal | 111 | 59.46 | 18.9 | 22 | 47.5 | 56 | 68 | 143 |
| longest | non-normal | 111 | 318,289 | 108,983 | 106,316 | 231,249 | 320,424 | 368,467 | 652,475 |
| GC_Content | normal | 111 | 49.2 | 0.15 | 48.8 | 49.12 | 49.2 | 49.34 | 49.44 |
| Completeness_Specific | non-normal | 111 | 100 | 0 | 100 | 100 | 100 | 100 | 100 |
| Contamination | non-normal | 111 | 0.13 | 0.17 | 0 | 0.05 | 0.06 | 0.1 | 0.73 |
| Total_Coding_Sequences | non-normal | 111 | 2,214 | 85.59 | 2,009 | 2,134 | 2,224 | 2,281 | 2,381 |
| Genome_Size | non-normal | 111 | 2,278,117 | 69,948 | 2,150,355 | 2,207,476 | 2,276,135 | 2,339,369 | 2,420,314 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 114 genomes including 3 RefSeq references
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.