Mycobacterium kansasii is a slow-growing, photochromogenic, acid-fast bacillus in the family Mycobacteriaceae, and the non-tuberculous mycobacterium whose pulmonary disease most closely mimics tuberculosis both clinically and radiographically. It is predominantly acquired from municipal water supplies rather than soil, and infection is most common in individuals with underlying lung disease or immunosuppression, including HIV. The genome of M. kansasii (~6.4 Mb) is divided into distinct subtypes (I-VII), with subtype I responsible for the vast majority of human disease, and shares more genomic similarity with the M. tuberculosis complex than most other NTM.
Derived from 656 genomes: 3 from RefSeq and 653 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | non-normal | 653 | 117,020 | 47,462 | 27,762 | 83,138 | 105,649 | 146,382 | 264,878 |
| no_of_contigs | non-normal | 653 | 231.32 | 64.93 | 116 | 190 | 216 | 249 | 522 |
| longest | non-normal | 653 | 416,882 | 174,440 | 120,780 | 285,931 | 373,447 | 569,102 | 919,824 |
| GC_Content | non-normal | 653 | 66.15 | 0.06 | 65.94 | 66.12 | 66.16 | 66.19 | 66.25 |
| Completeness_Specific | non-normal | 653 | 99.99 | 0.01 | 99.96 | 99.99 | 100 | 100 | 100 |
| Contamination | non-normal | 653 | 0.17 | 0.31 | 0.01 | 0.03 | 0.05 | 0.07 | 1.88 |
| Total_Coding_Sequences | non-normal | 653 | 5,899 | 114.62 | 5,672 | 5,812 | 5,873 | 5,966 | 6,397 |
| Genome_Size | non-normal | 653 | 6,486,673 | 103,116 | 6,303,319 | 6,414,679 | 6,453,738 | 6,550,373 | 6,901,612 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 656 genomes including 3 RefSeq references
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.