Derived from 14 genomes: 7 from RefSeq and 7 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for REFSEQ-QC-v1.
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | insufficient_data | 7 | 305,428 | 141,099 | 103,978 | 195,717 | 325,204 | 387,851 | 541,680 |
| no_of_contigs | insufficient_data | 7 | 79.43 | 41.21 | 40 | 52 | 67 | 88.5 | 168 |
| longest | insufficient_data | 7 | 671,207 | 282,427 | 325,022 | 469,386 | 632,390 | 789,474 | 1,223,321 |
| GC_Content | insufficient_data | 7 | 53.38 | 0.1 | 53.19 | 53.34 | 53.4 | 53.43 | 53.53 |
| Completeness_Specific | insufficient_data | 7 | 100 | 0 | 100 | 100 | 100 | 100 | 100 |
| Contamination | insufficient_data | 7 | 1.67 | 0.37 | 1.37 | 1.46 | 1.51 | 1.73 | 2.47 |
| Total_Coding_Sequences | insufficient_data | 7 | 5,757 | 108.44 | 5,549 | 5,712 | 5,801 | 5,814 | 5,900 |
| Genome_Size | insufficient_data | 7 | 6,116,005 | 133,791 | 5,831,599 | 6,083,932 | 6,161,142 | 6,206,530 | 6,238,369 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 14 genomes including 7 RefSeq references
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.