Derived from 8 genomes: 4 from RefSeq and 4 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for REFSEQ-QC-v1.
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | insufficient_data | 4 | 154,943 | 2,108 | 152,835 | 152,835 | 154,943 | 157,050 | 157,050 |
| no_of_contigs | insufficient_data | 4 | 112.5 | 5.55 | 106 | 107.5 | 113 | 118 | 118 |
| longest | insufficient_data | 4 | 464,135 | 50,697 | 413,438 | 413,438 | 464,135 | 514,832 | 514,832 |
| GC_Content | insufficient_data | 4 | 56.69 | 0 | 56.68 | 56.68 | 56.69 | 56.69 | 56.69 |
| Completeness_Specific | insufficient_data | 4 | 100 | 0 | 100 | 100 | 100 | 100 | 100 |
| Contamination | insufficient_data | 4 | 0.35 | 0.04 | 0.31 | 0.31 | 0.35 | 0.39 | 0.39 |
| Total_Coding_Sequences | insufficient_data | 4 | 5,502 | 57.5 | 5,444 | 5,444 | 5,501 | 5,559 | 5,560 |
| Genome_Size | insufficient_data | 4 | 5,773,113 | 21,773 | 5,751,340 | 5,751,340 | 5,773,058 | 5,794,831 | 5,794,997 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 8 genomes including 4 RefSeq references
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.