Derived from 8 genomes: 4 from RefSeq and 4 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for REFSEQ-QC-v1.
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | insufficient_data | 4 | 305,298 | 129,113 | 176,185 | 176,185 | 305,298 | 434,410 | 434,410 |
| no_of_contigs | insufficient_data | 4 | 55.25 | 21.75 | 33 | 33.75 | 55.5 | 77 | 77 |
| longest | insufficient_data | 4 | 637,281 | 175,703 | 461,578 | 461,578 | 637,281 | 812,983 | 812,983 |
| GC_Content | insufficient_data | 4 | 53.3 | 0.04 | 53.27 | 53.27 | 53.3 | 53.34 | 53.34 |
| Completeness_Specific | insufficient_data | 4 | 100 | 0 | 100 | 100 | 100 | 100 | 100 |
| Contamination | insufficient_data | 4 | 1.28 | 0.39 | 0.89 | 0.89 | 1.28 | 1.67 | 1.67 |
| Total_Coding_Sequences | insufficient_data | 4 | 5,864 | 83.25 | 5,780 | 5,781 | 5,864 | 5,947 | 5,947 |
| Genome_Size | insufficient_data | 4 | 6,273,678 | 42,697 | 6,230,971 | 6,230,986 | 6,273,666 | 6,316,358 | 6,316,409 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 8 genomes including 4 RefSeq references
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.