Derived from 12 genomes: 6 from RefSeq and 6 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for REFSEQ-QC-v1.
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | insufficient_data | 6 | 286,688 | 4,111 | 281,432 | 282,865 | 287,163 | 290,393 | 291,469 |
| no_of_contigs | insufficient_data | 6 | 50 | 5.89 | 44 | 45 | 48 | 55.5 | 58 |
| longest | insufficient_data | 6 | 677,752 | 159,764 | 551,773 | 558,407 | 578,310 | 821,957 | 903,172 |
| GC_Content | insufficient_data | 6 | 56.99 | 0.21 | 56.72 | 56.79 | 57.01 | 57.18 | 57.23 |
| Completeness_Specific | insufficient_data | 6 | 100 | 0 | 100 | 100 | 100 | 100 | 100 |
| Contamination | insufficient_data | 6 | 0.07 | 0.02 | 0.04 | 0.05 | 0.08 | 0.09 | 0.09 |
| Total_Coding_Sequences | insufficient_data | 6 | 4,944 | 87.29 | 4,821 | 4,864 | 4,992 | 5,012 | 5,018 |
| Genome_Size | insufficient_data | 6 | 5,329,804 | 79,859 | 5,217,793 | 5,256,673 | 5,373,311 | 5,392,060 | 5,398,309 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 12 genomes including 6 RefSeq references
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.