Derived from 149 genomes: 6 from RefSeq and 143 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.1.
QualiBact qualibact-v1.1 thresholds for Haemophilus haemolyticus, refined from v1.0 based on the Nov 2025 expert-feedback survey.
The genome-size range is 1.75–2.10 Mb, with warning bounds of 1.80–2.10 Mb. The maximum contig count is 100.
All other thresholds inherit unchanged from v1.0. See the methods page for qualibact-v1.1 for the full pipeline.
Threshold values and rationale for Haemophilus haemolyticus (qualibact-v1.1) contributed by:
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | non-normal | 143 | 159,951 | 76,906 | 44,903 | 100,477 | 149,502 | 187,022 | 377,445 |
| no_of_contigs | non-normal | 143 | 47.6 | 18.5 | 18 | 34.5 | 44 | 57.5 | 113 |
| longest | normal | 143 | 323,745 | 110,853 | 93,684 | 233,609 | 341,965 | 406,077 | 636,889 |
| GC_Content | non-normal | 143 | 38.43 | 0.08 | 38.27 | 38.37 | 38.42 | 38.48 | 38.74 |
| Completeness_Specific | non-normal | 143 | 100 | 0 | 100 | 100 | 100 | 100 | 100 |
| Contamination | non-normal | 143 | 0.03 | 0.08 | 0 | 0 | 0 | 0 | 0.38 |
| Total_Coding_Sequences | normal | 143 | 1,829 | 61.18 | 1,699 | 1,790 | 1,823 | 1,855 | 2,002 |
| Genome_Size | normal | 143 | 1,938,273 | 53,185 | 1,795,908 | 1,910,986 | 1,946,482 | 1,961,898 | 2,069,839 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 149 genomes including 6 RefSeq references
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | 1,750,000 | 1,800,000 | 2,100,000 | 2,100,000 |
| GC_Content | 38.28 | 38.3 | 38.63 | 38.74 |
| Total_Coding_Sequences | 1,700 | 1,700 | 2,000 | 2,000 |
| Completeness_Specific | 94 | 100 | - | - |
| Contamination | - | - | 1 | 2 |
| N50 | 46,000 | 50,000 | - | - |
| no_of_contigs | - | - | 100 | 100 |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.