Clostridium cagae is an anaerobic, Gram-positive, spore-forming rod of the family Clostridiaceae, isolated from human faecal samples. It is a commensal member of the human gut microbiota and has not been prominently associated with clinical disease, though its ecology within the intestinal community is not yet fully characterised. Genomically, C. cagae possesses a moderately sized genome typical of gut-associated clostridia, with genes related to complex polysaccharide degradation and short-chain fatty acid production.
Derived from 95 genomes. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | non-normal | 95 | 278,961 | 220,347 | 21,817 | 125,671 | 205,868 | 341,778 | 875,289 |
| no_of_contigs | non-normal | 95 | 86.68 | 48.9 | 30 | 54 | 74 | 102 | 354 |
| longest | non-normal | 95 | 690,072 | 386,638 | 70,450 | 334,248 | 621,230 | 940,768 | 1,699,017 |
| GC_Content | normal | 95 | 27.2 | 0.05 | 27.11 | 27.15 | 27.19 | 27.24 | 27.34 |
| Completeness_Specific | non-normal | 95 | 99.99 | 0.01 | 99.96 | 99.99 | 99.99 | 100 | 100 |
| Contamination | normal | 95 | 0.22 | 0.09 | 0 | 0.15 | 0.21 | 0.29 | 0.54 |
| Total_Coding_Sequences | non-normal | 95 | 3,625 | 151.43 | 3,305 | 3,514 | 3,567 | 3,756 | 3,939 |
| Genome_Size | non-normal | 95 | 3,878,076 | 97,194 | 3,681,070 | 3,807,017 | 3,845,163 | 3,965,515 | 4,059,015 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 95 genomes
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.