Derived from 190 genomes: 92 from RefSeq and 98 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.1.
QualiBact qualibact-v1.1 thresholds for Campylobacter coli, derived from a curated reference set (98 ATB assemblies + 92 RefSeq references) rather than the full AllTheBacteria-2024-08 distribution used for v1.0.
Compared with v1.0, the curated reference set changes several thresholds:
The underlying engine pipeline, outlier detection, and PASS / WARN / FAIL verdict logic are unchanged from v1.0. See the methods page for qualibact-v1.1 for details on how the v1.1 thresholds are derived and which species are part of the v1.1 track.
Threshold values and rationale for Campylobacter coli (qualibact-v1.1) contributed by:
Supported by: Instituto Nacional de Saúde Doutor Ricardo Jorge; GENEO project (Project No. 101113460; co-funded by the European Union under the EU4Health Programme (EU4H)).
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | normal | 98 | 135,128 | 56,923 | 30,451 | 98,994 | 139,240 | 170,963 | 265,739 |
| no_of_contigs | non-normal | 98 | 46.07 | 24.05 | 20 | 28 | 38 | 55.75 | 119 |
| longest | non-normal | 98 | 276,311 | 87,198 | 91,646 | 222,987 | 280,950 | 354,885 | 407,525 |
| GC_Content | non-normal | 98 | 31 | 0 | 31 | 31 | 31 | 31 | 31 |
| Completeness_Specific | non-normal | 98 | 99.97 | 0.02 | 99.91 | 99.97 | 99.97 | 99.98 | 99.99 |
| Contamination | non-normal | 98 | 0.03 | 0.03 | 0.01 | 0.02 | 0.02 | 0.04 | 0.26 |
| Total_Coding_Sequences | non-normal | 98 | 1,762 | 64.51 | 1,662 | 1,709 | 1,750 | 1,792 | 1,930 |
| Genome_Size | non-normal | 98 | 1,691,296 | 41,939 | 1,635,349 | 1,658,145 | 1,686,722 | 1,716,153 | 1,820,940 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 190 genomes including 92 RefSeq references
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.