QC Scheme: qualibact-v1.0 for Streptomyces anthocyanicus

Derived from 128 genomes: 6 from RefSeq and 122 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	122	244,594	77,412	24,607	230,122	266,623	288,597	407,347
no_of_contigs	non-normal	122	155.86	72.43	94	119	136	161	637
longest	non-normal	122	545,711	165,485	126,608	520,432	530,935	607,545	1,067,351
GC_Content	non-normal	122	72.16	0.03	72.02	72.14	72.16	72.18	72.27
Completeness_Specific	non-normal	122	100	0	100	100	100	100	100
Contamination	non-normal	122	0.01	0.06	0	0	0	0	0.54
Total_Coding_Sequences	non-normal	122	7,777	106.75	7,101	7,746	7,757	7,789	8,083
Genome_Size	non-normal	122	8,603,841	99,600	7,856,071	8,590,128	8,608,163	8,614,254	8,902,423

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Streptomyces anthocyanicus (qualibact-v1.0)

Derived from 128 genomes including 6 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.