QC Scheme: qualibact-v1.0 for Staphylococcus argenteus

Derived from 629 genomes: 17 from RefSeq and 612 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	612	379,370	209,716	21,572	234,638	325,730	488,289	1,081,922
no_of_contigs	non-normal	612	42.78	29.4	14	26.75	36	51	270
longest	non-normal	612	719,029	318,160	78,971	438,772	692,449	924,238	1,399,563
GC_Content	normal	612	32.27	0.04	32.17	32.24	32.27	32.3	32.4
Completeness_Specific	non-normal	612	100	0	99.98	100	100	100	100
Contamination	non-normal	612	0.22	0.14	0.05	0.13	0.18	0.25	1.39
Total_Coding_Sequences	non-normal	612	2,572	62.92	2,420	2,525	2,575	2,610	2,797
Genome_Size	normal	612	2,768,576	43,856	2,655,419	2,738,211	2,765,640	2,795,683	2,916,191

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Staphylococcus argenteus (qualibact-v1.0)

Derived from 629 genomes including 17 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.