QC Scheme: qualibact-v1.0 for Serratia nematodiphila

Derived from 263 genomes: 2 from RefSeq and 261 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	261	371,297	238,064	19,782	260,911	312,146	438,336	1,335,338
no_of_contigs	non-normal	261	92.3	92.3	21	52	71	81	582
longest	non-normal	261	818,261	438,183	88,498	544,621	724,685	1,035,968	2,493,872
GC_Content	non-normal	261	59.66	0.12	59.18	59.59	59.72	59.73	59.85
Completeness_Specific	non-normal	261	100	0	100	100	100	100	100
Contamination	non-normal	261	0.09	0.09	0.01	0.04	0.06	0.1	0.67
Total_Coding_Sequences	non-normal	261	4,772	144.04	4,590	4,687	4,705	4,815	5,358
Genome_Size	non-normal	261	5,118,136	78,367	4,939,194	5,068,891	5,081,597	5,171,638	5,457,290

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Serratia nematodiphila (qualibact-v1.0)

Derived from 263 genomes including 2 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.