Derived from 284 genomes: 6 from RefSeq and 278 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.
Threshold values and rationale for Serratia bockelmannii (qualibact-v1.0) contributed by:
Nov 2025 expert-feedback survey
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | non-normal | 278 | 446,001 | 256,638 | 27,582 | 299,475 | 373,467 | 560,704 | 1,588,841 |
| no_of_contigs | non-normal | 278 | 59.4 | 38.9 | 22 | 39.25 | 51 | 62 | 355 |
| longest | non-normal | 278 | 1,011,900 | 496,017 | 105,623 | 645,847 | 895,254 | 1,337,878 | 2,606,310 |
| GC_Content | non-normal | 278 | 59.33 | 0.17 | 58.64 | 59.23 | 59.35 | 59.44 | 59.71 |
| Completeness_Specific | non-normal | 278 | 100 | 0 | 100 | 100 | 100 | 100 | 100 |
| Contamination | non-normal | 278 | 0.22 | 0.18 | 0.01 | 0.09 | 0.21 | 0.27 | 1.23 |
| Total_Coding_Sequences | non-normal | 278 | 4,805 | 120.35 | 4,548 | 4,707 | 4,797 | 4,877 | 5,317 |
| Genome_Size | non-normal | 278 | 5,205,301 | 109,080 | 4,967,849 | 5,121,234 | 5,192,977 | 5,277,237 | 5,586,847 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 284 genomes including 6 RefSeq references
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.