Renibacterium salmoninarum is a Gram-positive, non-motile, slow-growing coccobacillus and the sole species of the genus Renibacterium within the family Micrococcaceae. It is the causative agent of bacterial kidney disease (BKD), a chronic and often fatal systemic infection of salmonid fish that represents a major concern in aquaculture worldwide. R. salmoninarum has a reduced genome (approximately 3.2 Mb) with a high proportion of insertion sequences, reflecting its obligate intracellular lifestyle and limited metabolic independence.
Derived from 12 genomes: 6 from RefSeq and 6 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for REFSEQ-QC-v1.
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | insufficient_data | 6 | 68,762 | 0 | 68,762 | 68,762 | 68,762 | 68,762 | 68,762 |
| no_of_contigs | insufficient_data | 6 | 86.67 | 0.94 | 86 | 86 | 86 | 87.5 | 88 |
| longest | insufficient_data | 6 | 203,866 | 3.56 | 203,861 | 203,863 | 203,868 | 203,869 | 203,869 |
| GC_Content | insufficient_data | 6 | 56.26 | 0 | 56.26 | 56.26 | 56.26 | 56.26 | 56.26 |
| Completeness_Specific | insufficient_data | 6 | 99.96 | 0.01 | 99.95 | 99.95 | 99.96 | 99.97 | 99.97 |
| Contamination | insufficient_data | 6 | 1.22 | 0.02 | 1.2 | 1.2 | 1.23 | 1.24 | 1.24 |
| Total_Coding_Sequences | insufficient_data | 6 | 3,408 | 4.23 | 3,401 | 3,405 | 3,408 | 3,411 | 3,413 |
| Genome_Size | insufficient_data | 6 | 3,061,036 | 133.44 | 3,060,847 | 3,060,918 | 3,061,127 | 3,061,132 | 3,061,134 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 12 genomes including 6 RefSeq references
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.