QC Scheme: qualibact-v1.0 for Parabacteroides goldsteinii

Derived from 113 genomes: 4 from RefSeq and 109 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	normal	109	184,495	63,789	23,367	140,850	188,059	230,453	384,850
no_of_contigs	non-normal	109	153.72	100.2	53	92	123	171	767
longest	normal	109	510,389	172,381	107,312	376,304	515,591	651,921	888,325
GC_Content	normal	109	43.46	0.12	43.19	43.4	43.47	43.54	43.79
Completeness_Specific	non-normal	109	99.97	0.04	99.83	99.95	99.98	99.99	100
Contamination	non-normal	109	1.37	0.56	0.57	0.93	1.28	1.82	2.83
Total_Coding_Sequences	non-normal	109	5,428	249.05	5,008	5,239	5,439	5,537	6,259
Genome_Size	non-normal	109	6,713,678	237,189	6,350,722	6,559,738	6,694,702	6,801,212	7,541,020

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Parabacteroides goldsteinii (qualibact-v1.0)

Derived from 113 genomes including 4 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.