QC Scheme: qualibact-v1.0 for Ornithobacterium rhinotracheale

Derived from 162 genomes: 5 from RefSeq and 157 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	normal	157	88,681	25,774	23,649	73,782	90,045	98,273	155,876
no_of_contigs	non-normal	157	101.01	26.8	61	84	94	112	222
longest	non-normal	157	213,802	45,472	83,029	201,210	209,056	228,624	423,189
GC_Content	non-normal	157	37.6	0.11	37.21	37.53	37.63	37.67	37.83
Completeness_Specific	non-normal	157	99.93	0.03	99.77	99.91	99.93	99.95	99.97
Contamination	non-normal	157	0.12	0.08	0.01	0.02	0.12	0.17	0.45
Total_Coding_Sequences	non-normal	157	2,249	48.53	2,150	2,218	2,235	2,282	2,426
Genome_Size	non-normal	157	2,324,355	31,178	2,255,806	2,305,806	2,316,605	2,345,681	2,414,481

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Ornithobacterium rhinotracheale (qualibact-v1.0)

Derived from 162 genomes including 5 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.