QC Scheme: qualibact-v1.0 for Oenococcus oeni

Derived from 120 genomes: 9 from RefSeq and 111 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	111	152,211	42,218	84,531	136,816	137,255	154,629	241,972
no_of_contigs	non-normal	111	35.06	7.85	22	29	33	39.5	63
longest	non-normal	111	404,746	64,344	220,138	379,670	446,268	450,608	514,002
GC_Content	non-normal	111	37.9	0.09	37.71	37.83	37.94	37.96	38.06
Completeness_Specific	non-normal	111	99.8	0.13	99.38	99.77	99.79	99.88	99.99
Contamination	normal	111	1.29	0.5	0.25	0.94	1.45	1.55	2.99
Total_Coding_Sequences	normal	111	1,890	44.18	1,789	1,857	1,885	1,927	1,988
Genome_Size	normal	111	1,814,845	33,822	1,729,845	1,789,690	1,809,244	1,842,792	1,888,919

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Oenococcus oeni (qualibact-v1.0)

Derived from 120 genomes including 9 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.