Derived from 145 genomes. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.
This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.
A combined summary table across all species is available on the summary page.
| Metric | Distribution | n | Mean | SD | Min | Q1 | Median | Q3 | Max |
|---|---|---|---|---|---|---|---|---|---|
| N50 | non-normal | 145 | 73,919 | 56,072 | 17,509 | 34,505 | 39,802 | 121,754 | 266,553 |
| no_of_contigs | non-normal | 145 | 58.99 | 36.99 | 5 | 14 | 75 | 87 | 161 |
| longest | non-normal | 145 | 146,806 | 72,835 | 44,073 | 93,712 | 103,974 | 219,784 | 275,583 |
| GC_Content | non-normal | 145 | 23.94 | 0.13 | 23.7 | 23.87 | 23.87 | 24.12 | 24.13 |
| Completeness_Specific | non-normal | 145 | 95.36 | 6.12 | 85.15 | 86.37 | 99.36 | 99.64 | 99.89 |
| Contamination | non-normal | 145 | 0.11 | 0.22 | 0 | 0.01 | 0.05 | 0.08 | 1.64 |
| Total_Coding_Sequences | non-normal | 145 | 771.71 | 204.6 | 465 | 468 | 902 | 911 | 971 |
| Genome_Size | non-normal | 145 | 897,996 | 240,649 | 538,708 | 539,616 | 1,054,668 | 1,056,061 | 1,082,538 |
Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.
Derived from 145 genomes
Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.
| Metric | Fail below | Warn below | Warn above | Fail above |
|---|---|---|---|---|
| Genome_Size | - | - | - | - |
| GC_Content | - | - | - | - |
| Total_Coding_Sequences | - | - | - | - |
| Completeness_Specific | - | - | - | - |
| Contamination | - | - | - | - |
| N50 | - | - | - | - |
| no_of_contigs | - | - | - | - |
| longest | - | - | - | - |
How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.