QC Scheme: qualibact-v1.0 for Lactobacillus paragasseri

Derived from 292 genomes: 8 from RefSeq and 284 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	284	402,987	356,884	28,032	109,396	258,968	576,682	1,170,853
no_of_contigs	non-normal	284	39.05	26.15	10	20	31.5	50	196
longest	non-normal	284	581,268	322,726	118,103	289,812	558,473	862,766	1,170,853
GC_Content	normal	284	34.79	0.1	34.5	34.72	34.79	34.85	35.08
Completeness_Specific	non-normal	284	99.95	0.07	99.17	99.95	99.97	99.98	100
Contamination	non-normal	284	0.11	0.11	0	0.04	0.1	0.13	1.08
Total_Coding_Sequences	non-normal	284	1,930	81.99	1,770	1,866	1,929	1,980	2,215
Genome_Size	non-normal	284	1,978,644	57,483	1,844,619	1,939,883	1,970,870	2,015,478	2,139,568

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Lactobacillus paragasseri (qualibact-v1.0)

Derived from 292 genomes including 8 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.