QC Scheme: qualibact-v1.0 for Hafnia paralvei

Derived from 219 genomes: 9 from RefSeq and 210 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	210	413,011	174,589	71,190	284,355	381,341	531,015	1,198,779
no_of_contigs	non-normal	210	70.48	28.09	35	50	62	84	183
longest	non-normal	210	925,194	404,846	226,449	617,541	860,301	1,133,174	2,245,375
GC_Content	non-normal	210	48.09	0.1	47.79	48.03	48.07	48.14	48.35
Completeness_Specific	non-normal	210	100	0	100	100	100	100	100
Contamination	non-normal	210	0.19	0.17	0.01	0.07	0.12	0.27	0.95
Total_Coding_Sequences	normal	210	4,388	141.67	3,968	4,301	4,369	4,470	4,749
Genome_Size	normal	210	4,803,888	111,603	4,460,613	4,738,784	4,797,508	4,861,951	5,063,442

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Hafnia paralvei (qualibact-v1.0)

Derived from 219 genomes including 9 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.