QC Scheme: qualibact-v1.0 for Fusobacterium necrophorum

Derived from 356 genomes: 6 from RefSeq and 350 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	350	122,745	46,877	36,811	92,780	117,542	155,570	382,644
no_of_contigs	non-normal	350	69.48	20.94	31	55	66	81	151
longest	non-normal	350	270,133	120,167	107,746	186,901	232,810	318,817	755,621
GC_Content	non-normal	350	35.09	0.14	34.5	35.03	35.11	35.17	35.46
Completeness_Specific	non-normal	350	100	0	99.97	100	100	100	100
Contamination	non-normal	350	0.17	0.1	0.01	0.1	0.16	0.22	0.56
Total_Coding_Sequences	normal	350	2,099	117.05	1,809	2,021	2,087	2,181	2,535
Genome_Size	non-normal	350	2,154,176	78,437	1,953,171	2,100,911	2,148,401	2,202,240	2,474,571

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Fusobacterium necrophorum (qualibact-v1.0)

Derived from 356 genomes including 6 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.