QC Scheme: qualibact-v1.0 for Enterococcus avium

Derived from 103 genomes: 4 from RefSeq and 99 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	normal	99	67,142	21,922	24,489	52,592	65,764	78,322	122,034
no_of_contigs	normal	99	222.95	56.34	110	186.5	217	253	401
longest	non-normal	99	208,428	60,087	89,671	163,871	192,890	269,286	324,678
GC_Content	normal	99	39	0.1	38.79	38.95	39	39.05	39.26
Completeness_Specific	non-normal	99	99.98	0.03	99.82	99.98	99.99	100	100
Contamination	non-normal	99	2.28	0.65	1.02	1.78	2.16	2.85	3.81
Total_Coding_Sequences	non-normal	99	4,403	138.37	4,104	4,288	4,395	4,510	4,634
Genome_Size	non-normal	99	4,394,940	124,795	4,117,902	4,295,755	4,374,407	4,470,412	4,610,316

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Enterococcus avium (qualibact-v1.0)

Derived from 103 genomes including 4 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.