QC Scheme: qualibact-v1.0 for Cronobacter turicensis

Derived from 108 genomes: 5 from RefSeq and 103 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	103	471,240	160,406	192,430	376,322	479,756	544,018	1,154,800
no_of_contigs	non-normal	103	44.19	18.21	18	33	39	51	106
longest	non-normal	103	1,034,986	400,493	465,564	772,548	881,240	1,249,862	1,937,499
GC_Content	non-normal	103	57.32	0.2	56.95	57.11	57.31	57.49	57.66
Completeness_Specific	non-normal	103	100	0	100	100	100	100	100
Contamination	non-normal	103	0.06	0.09	0	0.02	0.04	0.07	0.72
Total_Coding_Sequences	normal	103	4,169	115.47	3,975	4,086	4,145	4,236	4,465
Genome_Size	normal	103	4,574,804	92,098	4,391,773	4,512,433	4,581,612	4,628,355	4,808,532

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Cronobacter turicensis (qualibact-v1.0)

Derived from 108 genomes including 5 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.