QC Scheme: qualibact-v1.0 for Corynebacterium pseudodiphtheriticum

Derived from 106 genomes: 5 from RefSeq and 101 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	normal	101	322,410	106,785	103,278	240,192	344,568	397,255	587,490
no_of_contigs	non-normal	101	28.76	9.38	13	22	28	34	61
longest	non-normal	101	575,673	223,385	256,114	430,148	517,528	624,536	1,090,594
GC_Content	normal	101	55.28	0.06	55.12	55.24	55.28	55.33	55.45
Completeness_Specific	non-normal	101	100	0	99.99	99.99	100	100	100
Contamination	non-normal	101	0.13	0.15	0	0.02	0.07	0.18	0.76
Total_Coding_Sequences	normal	101	2,145	55.09	2,032	2,107	2,142	2,176	2,289
Genome_Size	normal	101	2,351,690	45,660	2,259,662	2,317,151	2,353,296	2,383,625	2,461,313

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Corynebacterium pseudodiphtheriticum (qualibact-v1.0)

Derived from 106 genomes including 5 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.