QC Scheme: qualibact-v1.0 for Corynebacterium jeikeium

Derived from 125 genomes: 3 from RefSeq and 122 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	122	149,846	53,165	72,732	101,745	141,367	186,603	330,499
no_of_contigs	normal	122	71.94	20.18	27	57	71	85.75	128
longest	non-normal	122	347,399	96,834	160,990	271,912	346,730	414,331	734,630
GC_Content	non-normal	122	62.14	0.37	61.51	61.8	62.31	62.5	62.63
Completeness_Specific	non-normal	122	99.97	0.02	99.87	99.96	99.98	99.98	100
Contamination	non-normal	122	0.23	0.43	0	0.01	0.05	0.16	2.12
Total_Coding_Sequences	non-normal	122	2,052	54.87	1,954	2,015	2,042	2,087	2,202
Genome_Size	normal	122	2,341,051	50,067	2,227,967	2,305,253	2,330,236	2,368,611	2,454,682

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Corynebacterium jeikeium (qualibact-v1.0)

Derived from 125 genomes including 3 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.