QC Scheme: qualibact-v1.0 for Citrobacter youngae

Derived from 142 genomes: 4 from RefSeq and 138 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	138	393,956	190,877	122,116	262,120	350,695	485,254	1,115,083
no_of_contigs	non-normal	138	94.67	53.41	27	48.25	78.5	138	223
longest	non-normal	138	867,649	337,820	319,328	660,216	734,382	1,005,618	1,976,741
GC_Content	non-normal	138	51.71	0.15	51.38	51.59	51.73	51.83	52
Completeness_Specific	non-normal	138	100	0	100	100	100	100	100
Contamination	non-normal	138	0.27	0.21	0.04	0.1	0.18	0.39	0.8
Total_Coding_Sequences	non-normal	138	4,848	356.59	4,275	4,560	4,770	5,152	5,560
Genome_Size	non-normal	138	5,059,191	295,361	4,587,143	4,811,099	4,992,604	5,322,409	5,644,983

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Citrobacter youngae (qualibact-v1.0)

Derived from 142 genomes including 4 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.