QC Scheme: qualibact-v1.0 for Citrobacter sedlakii

Derived from 101 genomes: 1 from RefSeq and 100 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	100	499,622	172,977	195,488	376,735	492,825	604,450	1,056,900
no_of_contigs	non-normal	100	65.39	23.62	26	50	58.5	75.5	156
longest	normal	100	1,039,622	322,970	449,388	790,844	1,017,300	1,278,939	1,741,678
GC_Content	non-normal	100	54.6	0.16	54.12	54.51	54.64	54.71	54.85
Completeness_Specific	non-normal	100	100	0	100	100	100	100	100
Contamination	non-normal	100	0.01	0.02	0	0	0	0.02	0.14
Total_Coding_Sequences	non-normal	100	4,415	194.07	4,126	4,281	4,340	4,532	5,037
Genome_Size	non-normal	100	4,740,577	155,443	4,501,312	4,643,627	4,683,097	4,842,881	5,162,130

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Citrobacter sedlakii (qualibact-v1.0)

Derived from 101 genomes including 1 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.