QC Scheme: qualibact-v1.0 for Citrobacter rodentium

Derived from 260 genomes: 3 from RefSeq and 257 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	257	89,396	5,416	54,683	88,017	89,211	93,974	95,409
no_of_contigs	non-normal	257	205.6	16.65	175	190	210	220	260
longest	non-normal	257	284,353	7,580	236,659	286,500	286,502	287,276	287,296
GC_Content	non-normal	257	54.57	0.02	54.52	54.57	54.57	54.58	54.71
Completeness_Specific	non-normal	257	100	0	100	100	100	100	100
Contamination	non-normal	257	0.01	0	0.01	0.01	0.01	0.01	0.02
Total_Coding_Sequences	non-normal	257	5,006	27.95	4,909	4,986	5,016	5,030	5,042
Genome_Size	non-normal	257	5,274,929	17,545	5,186,785	5,269,111	5,279,094	5,285,727	5,292,015

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Citrobacter rodentium (qualibact-v1.0)

Derived from 260 genomes including 3 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.