QC Scheme: qualibact-v1.0 for Citrobacter farmeri

Derived from 134 genomes: 4 from RefSeq and 130 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	130	345,512	201,958	50,212	179,174	285,019	474,179	1,001,837
no_of_contigs	non-normal	130	113.21	65.21	24	58.25	94.5	160	292
longest	non-normal	130	911,657	522,925	151,551	479,128	792,673	1,259,076	2,518,452
GC_Content	non-normal	130	53.05	0.21	52.49	52.87	53.08	53.21	53.46
Completeness_Specific	non-normal	130	100	0	100	100	100	100	100
Contamination	non-normal	130	0.36	0.42	0	0.07	0.15	0.44	1.51
Total_Coding_Sequences	non-normal	130	5,146	334.59	4,547	4,844	5,220	5,391	5,940
Genome_Size	non-normal	130	5,370,864	263,672	4,921,761	5,122,505	5,425,550	5,591,658	5,958,290

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Citrobacter farmeri (qualibact-v1.0)

Derived from 134 genomes including 4 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.