QC Scheme: qualibact-v1.0 for Caulobacter vibrioides

Derived from 224 genomes: 8 from RefSeq and 216 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	216	123,831	93,286	6,398	35,448	107,473	197,399	308,475
no_of_contigs	non-normal	216	225.74	283.8	42	54	93	222	1,040
longest	non-normal	216	292,047	157,238	27,301	157,217	322,802	454,730	456,848
GC_Content	non-normal	216	67.17	0.03	67.03	67.15	67.17	67.19	67.23
Completeness_Specific	non-normal	216	99.97	0.08	99.45	99.99	100	100	100
Contamination	non-normal	216	0.5	1.02	0	0.02	0.04	0.07	3.32
Total_Coding_Sequences	non-normal	216	3,823	187.52	3,669	3,721	3,736	3,785	4,300
Genome_Size	non-normal	216	4,011,858	16,999	3,957,149	4,006,339	4,015,955	4,024,567	4,037,472

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Caulobacter vibrioides (qualibact-v1.0)

Derived from 224 genomes including 8 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.