QC Scheme: qualibact-v1.0 for Campylobacter upsaliensis

Derived from 811 genomes: 2 from RefSeq and 809 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	809	83,986	33,362	19,841	56,206	78,422	112,935	194,230
no_of_contigs	non-normal	809	70.02	25.81	28	51	64	85	201
longest	non-normal	809	198,703	62,454	64,599	146,385	191,230	247,834	397,613
GC_Content	non-normal	809	34.75	0.22	34.09	34.62	34.77	34.92	35.12
Completeness_Specific	non-normal	809	99.99	0.01	99.97	99.99	99.99	100	100
Contamination	non-normal	809	0.3	0.21	0.02	0.12	0.23	0.44	1.57
Total_Coding_Sequences	non-normal	809	1,764	84.79	1,606	1,702	1,752	1,821	2,017
Genome_Size	non-normal	809	1,667,195	59,394	1,552,804	1,625,333	1,660,796	1,706,203	1,845,452

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Campylobacter upsaliensis (qualibact-v1.0)

Derived from 811 genomes including 2 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.