QC Scheme: qualibact-v1.0 for Campylobacter hyointestinalis

Derived from 119 genomes: 6 from RefSeq and 113 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	113	237,488	141,652	47,081	115,039	221,353	313,614	563,153
no_of_contigs	non-normal	113	35.71	15.48	9	24	32	46	90
longest	non-normal	113	399,321	158,684	101,452	263,572	441,171	523,268	695,283
GC_Content	non-normal	113	34.12	0.18	33.76	33.99	34.05	34.32	34.44
Completeness_Specific	non-normal	113	99.98	0.01	99.94	99.97	99.98	99.99	100
Contamination	non-normal	113	0.18	0.16	0.02	0.06	0.11	0.36	0.67
Total_Coding_Sequences	non-normal	113	1,841	89.22	1,724	1,782	1,818	1,884	2,094
Genome_Size	non-normal	113	1,761,771	52,550	1,683,721	1,727,197	1,746,533	1,781,948	1,926,298

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Campylobacter hyointestinalis (qualibact-v1.0)

Derived from 119 genomes including 6 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.