QC Scheme: qualibact-v1.0 for Campylobacter concheus

Derived from 147 genomes. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	147	128,734	32,552	25,266	111,778	137,128	150,384	217,139
no_of_contigs	non-normal	147	45.39	18.15	20	33	41	52.5	111
longest	non-normal	147	266,275	77,260	104,255	203,281	264,039	345,668	428,608
GC_Content	normal	147	29.62	0.13	29.29	29.54	29.63	29.69	29.98
Completeness_Specific	non-normal	147	100	0	99.99	100	100	100	100
Contamination	non-normal	147	0.04	0.03	0	0.02	0.03	0.05	0.15
Total_Coding_Sequences	non-normal	147	1,556	54.37	1,474	1,516	1,545	1,592	1,764
Genome_Size	non-normal	147	1,512,730	45,098	1,444,764	1,475,975	1,499,865	1,544,245	1,647,524

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Campylobacter concheus (qualibact-v1.0)

Derived from 147 genomes

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.