QC Scheme: qualibact-v1.0 for Burkholderia ubonensis

Derived from 256 genomes: 7 from RefSeq and 249 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	249	198,349	48,556	90,470	167,217	191,953	220,492	389,588
no_of_contigs	non-normal	249	148.6	46.82	67	118	138	168	343
longest	non-normal	249	526,246	130,251	299,948	432,506	491,281	605,012	1,055,783
GC_Content	non-normal	249	67.24	0.19	66.72	67.12	67.24	67.4	67.55
Completeness_Specific	non-normal	249	100	0	99.99	100	100	100	100
Contamination	non-normal	249	0.46	0.37	0.03	0.22	0.33	0.6	2.43
Total_Coding_Sequences	normal	249	6,723	311.7	5,691	6,493	6,740	6,919	7,601
Genome_Size	non-normal	249	7,508,900	301,346	6,291,246	7,260,500	7,525,402	7,709,371	8,272,920

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Burkholderia ubonensis (qualibact-v1.0)

Derived from 256 genomes including 7 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.