QC Scheme: qualibact-v1.0 for Burkholderia stagnalis

Derived from 91 genomes: 2 from RefSeq and 89 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	89	208,557	42,563	125,591	187,806	203,199	228,071	369,223
no_of_contigs	non-normal	89	137.09	31.79	85	119	129	148	242
longest	non-normal	89	585,609	148,694	360,206	503,466	534,034	673,528	1,088,933
GC_Content	non-normal	89	67.6	0.12	67.21	67.53	67.63	67.7	67.77
Completeness_Specific	non-normal	89	100	0	99.99	100	100	100	100
Contamination	normal	89	0.69	0.33	0.11	0.47	0.65	0.86	1.35
Total_Coding_Sequences	normal	89	6,875	150.96	6,614	6,732	6,843	6,989	7,317
Genome_Size	non-normal	89	7,707,777	170,870	7,397,044	7,561,545	7,692,943	7,856,533	8,188,760

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Burkholderia stagnalis (qualibact-v1.0)

Derived from 91 genomes including 2 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.