QC Scheme: REFSEQ-QC-v1 for Burkholderia seminalis

Derived from 8 genomes: 4 from RefSeq and 4 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for REFSEQ-QC-v1.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	insufficient_data	4	480,971	77,369	403,602	403,602	480,971	558,339	558,339
no_of_contigs	insufficient_data	4	41	7	34	34	41	48	48
longest	insufficient_data	4	779,678	116,764	662,914	662,914	779,678	896,441	896,441
GC_Content	insufficient_data	4	67.21	0.14	67.08	67.08	67.21	67.35	67.35
Completeness_Specific	insufficient_data	4	100	0	100	100	100	100	100
Contamination	insufficient_data	4	0.02	0.01	0.01	0.01	0.02	0.02	0.02
Total_Coding_Sequences	insufficient_data	4	6,990	163.5	6,826	6,826	6,990	7,153	7,153
Genome_Size	insufficient_data	4	7,799,531	183,716	7,615,815	7,615,815	7,799,531	7,983,246	7,983,246

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Burkholderia seminalis (REFSEQ-QC-v1)

Derived from 8 genomes including 4 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.