QC Scheme: qualibact-v1.0 for Burkholderia orbicola

Derived from 242 genomes: 1 from RefSeq and 241 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	241	229,848	215,539	8,123	86,055	174,067	296,659	1,050,135
no_of_contigs	non-normal	241	273.1	387.25	16	76	123	208	1,837
longest	non-normal	241	605,037	458,110	46,182	296,899	472,858	854,503	2,136,780
GC_Content	non-normal	241	66.88	0.15	66.3	66.79	66.88	66.99	67.19
Completeness_Specific	non-normal	241	99.99	0.05	99.42	100	100	100	100
Contamination	non-normal	241	0.79	0.7	0.01	0.26	0.5	1.28	3.18
Total_Coding_Sequences	non-normal	241	6,888	386.49	5,658	6,717	6,818	6,950	8,066
Genome_Size	non-normal	241	7,488,228	251,412	6,378,346	7,419,167	7,550,737	7,571,016	8,113,879

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Burkholderia orbicola (qualibact-v1.0)

Derived from 242 genomes including 1 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.