QC Scheme: qualibact-v1.0 for Bacteroides caccae

Derived from 403 genomes: 6 from RefSeq and 397 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	397	259,761	124,329	12,446	171,154	235,598	332,622	790,897
no_of_contigs	non-normal	397	109.09	80.96	31	65	87	128	750
longest	non-normal	397	631,289	242,275	63,741	453,040	618,381	803,016	1,479,291
GC_Content	normal	397	42.42	0.23	41.73	42.25	42.44	42.54	43.09
Completeness_Specific	non-normal	397	99.93	0.2	97.97	99.94	99.98	99.99	100
Contamination	non-normal	397	0.79	0.45	0.08	0.45	0.72	1.09	2.32
Total_Coding_Sequences	normal	397	4,317	283.24	3,674	4,108	4,304	4,546	5,246
Genome_Size	normal	397	5,181,464	254,407	4,533,091	5,036,756	5,175,819	5,389,024	5,867,951

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Bacteroides caccae (qualibact-v1.0)

Derived from 403 genomes including 6 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.