QC Scheme: qualibact-v1.0 for Aliivibrio fischeri

Derived from 186 genomes: 2 from RefSeq and 184 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	184	160,482	150,014	8,926	29,613	143,717	225,872	597,874
no_of_contigs	non-normal	184	237.51	188.07	52	88.75	167	340.5	798
longest	non-normal	184	454,275	338,398	42,164	108,433	456,039	738,690	1,123,204
GC_Content	non-normal	184	38.27	0.11	38.09	38.2	38.27	38.31	38.68
Completeness_Specific	non-normal	184	100	0	100	100	100	100	100
Contamination	non-normal	184	0.05	0.06	0	0.02	0.03	0.06	0.42
Total_Coding_Sequences	non-normal	184	3,958	101.72	3,673	3,886	3,998	4,017	4,337
Genome_Size	normal	184	4,293,150	91,348	4,071,955	4,225,141	4,294,850	4,315,960	4,519,830

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Aliivibrio fischeri (qualibact-v1.0)

Derived from 186 genomes including 2 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.