QC Scheme: qualibact-v1.0 for Aerococcus urinae

Derived from 100 genomes: 5 from RefSeq and 95 from other sources. For the derivation pipeline and the PASS / WARN / FAIL verdict model, see the methods page for qualibact-v1.0.

Summary table

This table summarises the distribution of each metric, including standard deviation, mean, median, and percentiles.

A combined summary table across all species is available on the summary page.

summary.csv

Show summary statistics inline

Metric	Distribution	n	Mean	SD	Min	Q1	Median	Q3	Max
N50	non-normal	95	231,483	127,171	58,131	144,113	219,129	259,394	573,953
no_of_contigs	non-normal	95	43.11	18.7	19	29.5	37	52	125
longest	normal	95	430,169	156,760	174,474	341,797	417,128	495,889	764,465
GC_Content	non-normal	95	42.32	0.26	41.71	42.11	42.43	42.55	42.6
Completeness_Specific	non-normal	95	99.98	0.01	99.9	99.97	99.98	99.99	99.99
Contamination	non-normal	95	0.36	0.15	0.14	0.22	0.33	0.5	1.01
Total_Coding_Sequences	non-normal	95	1,781	66.37	1,700	1,733	1,747	1,834	1,932
Genome_Size	non-normal	95	1,991,533	66,191	1,899,917	1,944,790	1,959,637	2,043,421	2,150,594

Full statistics including KS test vs RefSeq and Wasserstein distance are in the downloadable summary.csv.

Suggested thresholds for Aerococcus urinae (qualibact-v1.0)

Derived from 100 genomes including 5 RefSeq references

Both Fail and Warn bands shown as the published rounded values — easier to cite and consistent across the species page, CSV downloads, and downstream QC tools.

Metric	Fail below	Warn below	Warn above	Fail above
Genome_Size	-	-	-	-
GC_Content	-	-	-	-
Total_Coding_Sequences	-	-	-	-
Completeness_Specific	-	-	-	-
Contamination	-	-	-	-
N50	-	-	-	-
no_of_contigs	-	-	-	-
longest	-	-	-	-

How to read this: A value outside a failure limit fails QC. Within the failure limits, values beyond a warning limit are borderline and worth a manual look; values within the warning limits pass that criterion. A dash means that no bound is defined on that side.